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Question: cant download biocparallel
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gravatar for michel.moser
23 months ago by
michel.moser0 wrote:

Dear bioconductors, 

I would like to install DESeq2 but get stuck with an Error that it cant find the corresponding tar for the required biocparallel package. 

Could someone fix the link to this file? Or am i doing something wrong?

Error: 

 

> biocLite("DESeq2")

 

Error in download.file(url, destfile, method, mode = "wb", ...) :
  cannot download all files
In addition: Warning message:
In download.file(url, destfile, method, mode = "wb", ...) :
  URL 'https://bioconductor.org/packages/3.3/bioc/src/contrib/BiocParallel_1.6.3.tar.gz': status was '404 Not Found'
Warning in download.packages(pkgs, destdir = tmpd, available = available,  :
  download of package ‘BiocParallel’ failed
trying URL 'https://bioconductor.org/packages/3.3/bioc/src/contrib/DESeq2_1.12.3.tar.gz'
Content type 'unknown' length 1324782 bytes (1.3 MB)
==================================================
downloaded 1.3 MB

ERROR: dependency ‘BiocParallel’ is not available for package ‘DESeq2’

ADD COMMENTlink modified 23 months ago by Martin Morgan ♦♦ 22k • written 23 months ago by michel.moser0
0
gravatar for Martin Morgan
23 months ago by
Martin Morgan ♦♦ 22k
United States
Martin Morgan ♦♦ 22k wrote:

Can you simply 'try again' in a new R session

BiocInstaller::biocLite("BiocParallel")

The version number in the url -- 1.6.3 -- is different from the version number available -- 1.6.4. Somewhere, the file that tells R what packages are available is out-of-date with the packages that are actually available.

ADD COMMENTlink written 23 months ago by Martin Morgan ♦♦ 22k
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