DupRadar and Picard2.6.0
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ekornobis ▴ 10
@ekornobis-11284
Last seen 6.5 years ago

I'm starting using dupRadar. I tried to use the last version of Picard (2.6.0) with markDuplicates (dupRadar function) but without success:

Error: Unable to access jarfile /opt/picard-tools-2.5.0/MarkDuplicates.jar

Trying with past version of Picard (1.119), there is no problem.

I think the only issue is related to the path setting. Indeed Picard 2.6.0 is coming as a single "picard.jar" file while the previous version where organized as a folder containing all different libraries as .jar.

Or am I missing something ?

Thanks !

dupradar • 1.1k views
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@sergisayolspuig-8816
Last seen 22 months ago
Germany

Right, currently dupRadar works only with the "old" versions of Picard where the tools were still spread as independant .jar files. I'll patch it for the next release (**EDIT: Bioconductor 3.5**).

cheers,

Sergi

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