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Question: DupRadar and Picard2.6.0
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gravatar for ekornobis
15 months ago by
ekornobis10
ekornobis10 wrote:

I'm starting using dupRadar. I tried to use the last version of Picard (2.6.0) with markDuplicates (dupRadar function) but without success:

Error: Unable to access jarfile /opt/picard-tools-2.5.0/MarkDuplicates.jar

Trying with past version of Picard (1.119), there is no problem.

I think the only issue is related to the path setting. Indeed Picard 2.6.0 is coming as a single "picard.jar" file while the previous version where organized as a folder containing all different libraries as .jar.

Or am I missing something ?

Thanks !

ADD COMMENTlink modified 12 months ago by sergisayolspuig40 • written 15 months ago by ekornobis10
0
gravatar for sergisayolspuig
12 months ago by
Germany
sergisayolspuig40 wrote:

Right, currently dupRadar works only with the "old" versions of Picard where the tools were still spread as independant .jar files. I'll patch it for the next release (**EDIT: Bioconductor 3.5**).

cheers,

Sergi

ADD COMMENTlink modified 12 months ago • written 12 months ago by sergisayolspuig40
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