I have a list of Kegg Orthology (K) numbers that I would like to covert from K to entrezID to use clusterProfiler package. Currently, I am trying to install the package org.Hs.egPATH to use with the bitr command from clusterProfiler. My inquiry is this:
I am getting the following error after I run the following command: source("https://bioconductor.org/biocLite.R")
1: package ‘org.Hs.egPATH’ is not available (for R version 3.3.1)
2: In install.packages(update[instlib == l, "Package"], l, repos = repos, :
installation of package ‘Matrix’ had non-zero exit status
3: In install.packages(update[instlib == l, "Package"], l, repos = repos, :
installation of package ‘rgl’ had non-zero exit status
I was able to download the org.Hs.eg.db package without a problem. Any recommendations as to when it will be available? Is there a work-around on how to obtain the org.Hs.egPATH package?
Thank you very much!