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thank you for your reply. Talking about the structural variants, in principle, I would like to do the following :
-- for inversions, duplications, deletions (and insertions) : to know the genes that are affected by these chromosomal alterations (and if the chromosomal alteration impacts on exons, introns, or intergenic regions),
-- for translocations: to know the closest genes (or the closest exons) that are impacted by the translocation.
any suggestions are welcome. many thanks,