Question: Defining your own chromosome annotations
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gravatar for Palmer, Lance
14.6 years ago by
Palmer, Lance30 wrote:
I am working with a number of bacterial genomes. I would like to define my own chromosome and annotations along the chromosomes, then view gene expression with regards to these genes. geneplotter and annotate seem to use already available data structures. Is there a way for a use to design there own? Thanks Lance Palmer
geneplotter genomes • 369 views
ADD COMMENTlink modified 14.6 years ago by Sean Davis21k • written 14.6 years ago by Palmer, Lance30
Answer: Defining your own chromosome annotations
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gravatar for Sean Davis
14.6 years ago by
Sean Davis21k
United States
Sean Davis21k wrote:
Lance, You probably want to look at the AnnBuilder package, but I don't think it supports bacterial genomes (? for Jianhua). However, what is the annotation that you have for each "gene"? Genbank accession? Refseq? Do you have the chromosome locations? What arrays are you using? Sean ----- Original Message ----- From: "Palmer, Lance" <palmer@cshl.edu> To: <bioconductor@stat.math.ethz.ch> Sent: Monday, May 02, 2005 11:09 AM Subject: [BioC] Defining your own chromosome annotations >I am working with a number of bacterial genomes. I would like to define my >own chromosome and annotations along the chromosomes, then view gene >expression with regards to these genes. geneplotter and annotate seem to >use already available data structures. Is there a way for a use to design >there own? > > Thanks > Lance Palmer > > _______________________________________________ > Bioconductor mailing list > Bioconductor@stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor >
ADD COMMENTlink written 14.6 years ago by Sean Davis21k
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