Defining your own chromosome annotations
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@palmer-lance-1222
Last seen 7.7 years ago
I am working with a number of bacterial genomes. I would like to define my own chromosome and annotations along the chromosomes, then view gene expression with regards to these genes. geneplotter and annotate seem to use already available data structures. Is there a way for a use to design there own? Thanks Lance Palmer
geneplotter genomes geneplotter genomes • 492 views
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@sean-davis-490
Last seen 6 days ago
United States
Lance, You probably want to look at the AnnBuilder package, but I don't think it supports bacterial genomes (? for Jianhua). However, what is the annotation that you have for each "gene"? Genbank accession? Refseq? Do you have the chromosome locations? What arrays are you using? Sean ----- Original Message ----- From: "Palmer, Lance" <palmer@cshl.edu> To: <bioconductor@stat.math.ethz.ch> Sent: Monday, May 02, 2005 11:09 AM Subject: [BioC] Defining your own chromosome annotations >I am working with a number of bacterial genomes. I would like to define my >own chromosome and annotations along the chromosomes, then view gene >expression with regards to these genes. geneplotter and annotate seem to >use already available data structures. Is there a way for a use to design >there own? > > Thanks > Lance Palmer > > _______________________________________________ > Bioconductor mailing list > Bioconductor@stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor >
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