How to simulate count data to test rnaseq analysis code?
1
0
Entering edit mode
kjo ▴ 70
@kjo-11078
Last seen 7.2 years ago

All the rnaseq data simulation stuff I've found seems to be based on simulating reads, and applying a full analysis stack to those simulated reads.

I'd prefer to simulate the counts matrix directly.

Is there a package to generate synthetic counts data for testing/comparing rnaseq analysis software?

 

rnaseq_analysis • 1.0k views
ADD COMMENT
1
Entering edit mode
@gordon-smyth
Last seen 18 minutes ago
WEHI, Melbourne, Australia

The following link gives complete code for the simulations presented in the voom paper:

  http://bioinf.wehi.edu.au/voom/

ADD COMMENT

Login before adding your answer.

Traffic: 645 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6