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Question: Installing problem Bioconductor
0
gravatar for tran_tim
13 months ago by
tran_tim10
United States
tran_tim10 wrote:

Error message

source("https://bioconductor.org/biocLite.R")
Bioconductor version 3.3 (BiocInstaller 1.22.3), ?biocLite for help
> biocLite("Rsubread")
BioC_mirror: https://bioconductor.org
Using Bioconductor 3.3 (BiocInstaller 1.22.3), R 3.3.1 (2016-06-21).
Installing package(s) ‘Rsubread’
Package which is only available in source form, and may need compilation of
  C/C++/Fortran: ‘Rsubread’
  These will not be installed
Old packages: 'foreign', 'lattice', 'Matrix', 'mgcv', 'survival'
Update all/some/none? [a/s/n]: 
a

Warning in install.packages(update[instlib == l, "Package"], l, repos = repos,  :
  'lib = "C:/Program Files/R/R-3.3.1/library"' is not writable
ADD COMMENTlink modified 13 months ago by Martin Morgan ♦♦ 20k • written 13 months ago by tran_tim10

The Rsubread author has not made this package available on Windows; clicking on the 'platforms: some' badge of the package landing page takes you to the bottom, where you'll see Linux and Mac software but no Windows.

ADD REPLYlink written 13 months ago by Martin Morgan ♦♦ 20k
0
gravatar for Vijay Lakhujani
13 months ago by
India
Vijay Lakhujani0 wrote:

Hi,

Looks like you are working in windows OS. Check if you have read/write permission for the directory C:/Program Files/R/R-3.3.1/library.

To set read/write permission:

  1. Right-click the folder (C:/Program Files/R/R-3.3.1/library) , click Properties, and then click the Security tab.

  2. Click Edit to open the Permissions for <Object> dialog box.

  3. To allow  a permission, in the Permissions for <User or Group> box, select the Allow check box.

Let me know if this helps.

ADD COMMENTlink modified 13 months ago • written 13 months ago by Vijay Lakhujani0

Alternatively you could try to run R/RStudio in as Admin.

ADD REPLYlink written 13 months ago by bi_Scholar0
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