Hi,

My question is more naive. I am using ChIPseeker to compare multiple Peak files. How to read them all and store in "files" object.

files <- getSampleFiles()

Let say I have two peak files

/myFolder/peak1.bed

/myFolder/peak2.bed

# How to read and calculate tagMatrix for my multiple ChIP-seq files.. 
I have sam, bam, bed format aligned files as well. How can I come to

tagMatrixList from the files that I have?

Could you please show me the beginning codes/steps.

many thanks

thanks