Question: ChIPseeker, read multiple peak files
0
gravatar for tintinfinfin123
3.1 years ago by
tintinfinfin1230 wrote:

Hi,

My question is more naive. I am using ChIPseeker to compare multiple Peak files. How to read them all and store in "files" object.

files <- getSampleFiles()

Let say I have two peak files

/myFolder/peak1.bed

/myFolder/peak2.bed

# How to read and calculate tagMatrix for my multiple ChIP-seq files.. 
I have sam, bam, bed format aligned files as well. How can I come to
tagMatrixList from the files that I have?
Could you please show me the beginning codes/steps.

many thanks

thanks

 
chipseeker • 777 views
ADD COMMENTlink modified 3.1 years ago by James W. MacDonald51k • written 3.1 years ago by tintinfinfin1230

You are welcome to post your question in either this site or biostars, but don't post in both of them.

This question was asked in https://www.biostars.org/p/214557/ and was answered in biostars. 

 

 

ADD REPLYlink written 3.1 years ago by Guangchuang Yu1.1k
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