Is there any package for lnrna disease ontology or mrna interaction ? is there any other packges or databsess for gene ontology in mouse hope you will be fine, I am trying to use DOSE package but for disease ontology enrichment analysis I want
1. what kind of input file it can take eg(csv) is okay?
2. which organism it supports I am trying to use for mouse ?
3. I tried for my sample gene lists using Enterz id but every time no map found
4. I used these commands mentioned in pdf
enrichDO(gene, ont = "DO", pvalueCutoff = 0.05, pAdjustMethod = "BH", universe, minGSSize = 10, maxGSSize = 500, qvalueCutoff = 0.2, readable = FALSE)
data(geneList) gene = names(geneList)[geneList > 1] yy = enrichDO(gene, pvalueCutoff=0.05) summary(yyExamplesenrichResult-
but every time no map found?
CAS TWAS M.Azhar