methyAnalysis: heatmapByChromosome not works
0
0
Entering edit mode
@shicheng-guo-7973
Last seen 14 months ago
United States

The following error was reported when the example code was run:

 

library(methyAnalysis)
## load the example data
data(exampleMethyGenoSet)

 

eatmapByChromosome(exampleMethyGenoSet, gene='6493',  genomicFeature='TxDb.Hsapiens.UCSC.hg19.knownGene', includeGeneBody=TRUE, newPlot=FALSE)
Error in `genome<-`(`*tmp*`, value = "hg19") :
  Failed to set session genome to 'hg19'

By the way: everything is okay for plotMethylationHeatmapByGene

 

> sessionInfo()
R version 3.3.1 (2016-06-21)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 16.04.1 LTS

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8
 [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8
 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C
 [9] LC_ADDRESS=C               LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C

attached base packages:
 [1] stats4    parallel  grid      stats     graphics  grDevices utils
 [8] datasets  methods   base

 

methyAnalysis • 724 views
ADD COMMENT

Login before adding your answer.

Traffic: 422 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6