Error with phyloseq R package with Conda install
Entering edit mode
kpitz23 • 0
Last seen 5.8 years ago


The current phyloseq package available for installation using Anaconda ( doesn't work with the current version of R that is updated by Anaconda. It keeps finding conflict with different components of the latest R build.

Would it be possible to update the phyloseq package to be compatible with the latest version of R? Or please let me know if I'm doing something wrong.

Thank you!

$ conda install -c bioconda -c r bioconductor-phyloseq

Using Anaconda API:

Fetching package metadata .............

Solving package specifications: ....


The following specifications were found to be in conflict:

  - bioconductor-phyloseq

  - r-pryr -> r-base 3.3.1*

Use "conda info <package>" to see the dependencies for each package.


software error phyloseq anaconda • 1.5k views

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