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Question: Uniting SRA Data into a single file
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gravatar for grecoandreauni
12 months ago by
grecoandreauni0 wrote:

i want to write a code in R, that reads 2 or more SRA files, and then unite them into a single file, problem is, i don't understand how to operate the SRA data in R, i read around and it suggested to either convert or directly download them in the fastq format, but even doing that, i still don't understand how am i supposed to load the data into R in the first place even when operating with the fastq format

i got myself SRAdb already and with SRAdb i can execute queries on the SRA database and download SRA files, the problem is i don't understand how i can then load the SRA file as data in R in order to create a single file that unite multiple SRA files

ADD COMMENTlink modified 12 months ago by Martin Morgan ♦♦ 20k • written 12 months ago by grecoandreauni0
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gravatar for Martin Morgan
12 months ago by
Martin Morgan ♦♦ 20k
United States
Martin Morgan ♦♦ 20k wrote:

Use ShortRead readFastq() / writeFastq() for reading and writing fastq files, including appending files.

ADD COMMENTlink written 12 months ago by Martin Morgan ♦♦ 20k
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