Uniting SRA Data into a single file
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@grecoandreauni-11804
Last seen 4.9 years ago

i want to write a code in R, that reads 2 or more SRA files, and then unite them into a single file, problem is, i don't understand how to operate the SRA data in R, i read around and it suggested to either convert or directly download them in the fastq format, but even doing that, i still don't understand how am i supposed to load the data into R in the first place even when operating with the fastq format

i got myself SRAdb already and with SRAdb i can execute queries on the SRA database and download SRA files, the problem is i don't understand how i can then load the SRA file as data in R in order to create a single file that unite multiple SRA files

R fastq SRA sradb • 651 views
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@martin-morgan-1513
Last seen 9 weeks ago
United States

Use ShortRead readFastq() / writeFastq() for reading and writing fastq files, including appending files.