Question: how to fix this error: the argument 'intgroup' should specify columns of colData(dds)
0
gravatar for becca.grant149
2.6 years ago by
becca.grant1490 wrote:

how do I fix this error message?

 

> plotPCA(rld,intgroup=c("condition","type"))
Error in .local(object, ...) : 
  the argument 'intgroup' should specify columns of colData(dds)

deseq2 • 1.5k views
ADD COMMENTlink modified 2.6 years ago by Michael Love24k • written 2.6 years ago by becca.grant1490

change the intgroup to this

plotPCA(rld,intgroup=c("condition","sizeFactor"))
ADD REPLYlink written 4 weeks ago by chaimolwangjing0
Answer: how to fix this error: the argument 'intgroup' should specify columns of colData
0
gravatar for Michael Love
2.6 years ago by
Michael Love24k
United States
Michael Love24k wrote:

Simply reading the content of the message printed here, the function is expecting condition and type to be the names of columns of:

colData(dds)

Is this the case?

ADD COMMENTlink written 2.6 years ago by Michael Love24k
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