Question: how to fix this error: the argument 'intgroup' should specify columns of colData(dds)
0
gravatar for becca.grant149
2.9 years ago by
becca.grant1490 wrote:

how do I fix this error message?

 

> plotPCA(rld,intgroup=c("condition","type"))
Error in .local(object, ...) : 
  the argument 'intgroup' should specify columns of colData(dds)

deseq2 • 1.7k views
ADD COMMENTlink modified 2.9 years ago by Michael Love25k • written 2.9 years ago by becca.grant1490

change the intgroup to this

plotPCA(rld,intgroup=c("condition","sizeFactor"))
ADD REPLYlink written 4 months ago by chaimolwangjing0
Answer: how to fix this error: the argument 'intgroup' should specify columns of colData
0
gravatar for Michael Love
2.9 years ago by
Michael Love25k
United States
Michael Love25k wrote:

Simply reading the content of the message printed here, the function is expecting condition and type to be the names of columns of:

colData(dds)

Is this the case?

ADD COMMENTlink written 2.9 years ago by Michael Love25k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 204 users visited in the last hour