RSubread buildindex error
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sh24 • 0
@sh24-11922
Last seen 7.3 years ago

Hi guys i'm getting the following error for Rsubread buildindex.

"ERROR: Input file 'hg19.fa' is not found or is not accessible. No index was built."

The file exists and I've given all file permissions. Please help

 

rsubread • 880 views
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@gordon-smyth
Last seen 2 hours ago
WEHI, Melbourne, Australia

The error message seems pretty self-explanatory. Obviously the file is not in your current working directory or where you told R it was.

If you want more help, give the full Rsubread code that lead to the error message, and use dir() to show what files are accessible from your session.

The posting guide might also help you compose a more complete question: http://www.bioconductor.org/help/support/posting-guide/

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