Question: RSubread buildindex error
gravatar for sh24
15 months ago by
sh240 wrote:

Hi guys i'm getting the following error for Rsubread buildindex.

"ERROR: Input file 'hg19.fa' is not found or is not accessible. No index was built."

The file exists and I've given all file permissions. Please help


ADD COMMENTlink modified 15 months ago by Gordon Smyth32k • written 15 months ago by sh240
gravatar for Gordon Smyth
15 months ago by
Gordon Smyth32k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
Gordon Smyth32k wrote:

The error message seems pretty self-explanatory. Obviously the file is not in your current working directory or where you told R it was.

If you want more help, give the full Rsubread code that lead to the error message, and use dir() to show what files are accessible from your session.

The posting guide might also help you compose a more complete question:

ADD COMMENTlink modified 14 months ago • written 15 months ago by Gordon Smyth32k
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