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Question: RSubread buildindex error
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gravatar for sh24
2.0 years ago by
sh240
sh240 wrote:

Hi guys i'm getting the following error for Rsubread buildindex.

"ERROR: Input file 'hg19.fa' is not found or is not accessible. No index was built."

The file exists and I've given all file permissions. Please help

 

ADD COMMENTlink modified 2.0 years ago by Gordon Smyth35k • written 2.0 years ago by sh240
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gravatar for Gordon Smyth
2.0 years ago by
Gordon Smyth35k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
Gordon Smyth35k wrote:

The error message seems pretty self-explanatory. Obviously the file is not in your current working directory or where you told R it was.

If you want more help, give the full Rsubread code that lead to the error message, and use dir() to show what files are accessible from your session.

The posting guide might also help you compose a more complete question: http://www.bioconductor.org/help/support/posting-guide/

ADD COMMENTlink modified 2.0 years ago • written 2.0 years ago by Gordon Smyth35k
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