Question: Does bsseq package work with technical replicates?
gravatar for Welliton Souza
2.5 years ago by
Welliton Souza70 wrote:

I would like to know whether bsseq package works with technical replicates (i.e. two whole-genome bisulfite sequencing of the same DNA sample). How bsseq deal with replicate information? The code below exemplifies what I have done.

> pData(bismarkBSseq)
DataFrame with 8 rows and 2 columns
             Type         Rep
         <factor> <character>
C1_R1     Control  replicate1
C2_R1     Control  replicate1
T1_R1   Treatment  replicate1
T2_R1   Treatment  replicate1
C1_R2     Control  replicate2
C2_R2     Control  replicate2
T1_R2   Treatment  replicate2
T2_R2   Treatment  replicate2
bsseq wgbs • 402 views
ADD COMMENTlink modified 2.5 years ago • written 2.5 years ago by Welliton Souza70
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 328 users visited in the last hour