The descriptions of score methods in DiffBind
1
0
Entering edit mode
Gary ▴ 20
@gary-7967
Last seen 2.6 years ago

Hi,

The descriptions of score methods in DiffBind manual are trimmed and cannot be understood in its pdf file (fig1). Could you provide them for me to learn? Many thanks. By the way, the default is DBA_SCORE_TMM_MINUS_FULL?

Best,

Gary

fig1

DiffBind dba.count score manual PDF • 663 views
1
Entering edit mode
Rory Stark ★ 4.1k
@rory-stark-5741
Last seen 16 days ago
CRUK, Cambridge, UK

You are correct about the default score, however this is only used for plots, and only when the entire experiment if plotted. When data form a speicic contrast is used, the normalised counts from that comparison are plotted and/or reported.

The best way to get all the text is within R:

> library(DiffBind)
> ?dba.count

Cheers-

Rory

0
Entering edit mode

Thank you so much for your help.