Supplying ToPASeq a list of fold changes and their associated p-values
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rubi ▴ 100
@rubi-6462
Last seen 3.3 years ago

Hi,

 

Is it possible to run any of ToPASeq's: TopologyGSA, DEGraph, clipper, SPIA, TAPPA, PRS, PWEA with a custom list of fold-changes and associated p-values rather than having these functions run a DE analysis internally?

It doesn't seem so from the manual but that would be very helpful.

ToPASeq • 527 views
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theobroma22 ▴ 10
@theobroma22-11920
Last seen 4.9 years ago

Your question is hard to understand. Can you elaborate or provide some simulated, or example data? What do you mean by 'custom' FCs and their associated p-value...do you mean simulated data? 

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