I can't dowload DESeq2 onto my laptop, although it was no problem on the desktop computer sitting right next to it. Here is the end of the installation process. I assume that it is the non-zero exit status that is the problem but I don't know why.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c half_range_mode.cpp -o half_range_mode.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c init.c -o init.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c nd.c -o nd.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c pAUC.c -o pAUC.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c rowPAUCs.c -o rowPAUCs.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c rowttests.c -o rowttests.o
gfortran-4.2 -arch x86_64 -fPIC -g -O2 -c ttest.f -o ttest.o
make: gfortran-4.2: No such file or directory
make: *** [ttest.o] Error 1
ERROR: compilation failed for package 'genefilter'
* removing '/Library/Frameworks/R.framework/Versions/3.2/Resources/library/genefilter'
During startup - Warning messages:
1: Setting LC_CTYPE failed, using "C"
2: Setting LC_TIME failed, using "C"
3: Setting LC_MESSAGES failed, using "C"
4: Setting LC_MONETARY failed, using "C"
ERROR: dependency 'genefilter' is not available for package 'DESeq2'
* removing '/Library/Frameworks/R.framework/Versions/3.2/Resources/library/DESeq2'
The downloaded source packages are in
'/private/var/folders/bt/v67qrz_88vl52h0059_t6yd00000gp/T/RtmpAKHBGS/downloaded_packages'
Old packages: 'Hmisc', 'Matrix', 'RcppArmadillo', 'acepack', 'cluster', 'mgcv'
Update all/some/none? [a/s/n]:
n
Warning messages:
1: In install.packages(pkgs = doing, lib = lib, ...) :
installation of package 'genefilter' had non-zero exit status
2: In install.packages(pkgs = doing, lib = lib, ...) :
installation of package 'DESeq2' had non-zero exit status
> install.packages("DESeq2")
Warning in install.packages :
package 'DESeq2' is not available (for R version 3.2.1)
