Question: annotation problem with hgu133plus2
0
gravatar for Seth Falcon
14.2 years ago by
Seth Falcon7.4k
Seth Falcon7.4k wrote:
Hi Yanqin, Yanqin Yang <yanqin_yang@yahoo.com> writes: > error message. Would anyone tell me how to fix it? > > annosam <- aafTableAnn(samNames,"hgu133plus2",aaf.handler()) > Error in mget(c("1555832_s_at", "1555847_a_at", "201169_s_at", > "201236_s_at", : > recursive default argument reference >> sessionInfo() > R version 2.1.0, 2005-04-18, i386-pc-mingw32 > attached base packages: > [1] "tools" "methods" "stats" "graphics" "grDevices" "utils" > [7] "datasets" "base" > other attached packages: > hgu133plus2cdf annaffy GO KEGG hgu133plus2 > "1.5.1" "1.0.17" "1.6.5" "1.6.5" "1.8.4" > annotate siggenes affy reposTools Biobase > "1.5.1-1" "1.2.11" "1.5.8-1" "1.5.2" "1.5.0" You seem to have quite a mix of old and new Bioconductor packages and I would wager that this is the source of your troubles. Try upgrading (reinstalling) the Bioconductor packages so that you are current with the latest release, Bioc 1.6. In particular, you'll need to upgrade: annaffy, GO, KEGG, annotate, siggenes, affy, reposTools, Biobase. Then give it another shot and report back if you encounter the same (or different) difficulties. + seth
ADD COMMENTlink written 14.2 years ago by Seth Falcon7.4k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 147 users visited in the last hour