Dears deseq2 staff, when I have a constrast object (example: results(dd, contrast=c("Condition", "A","B"))), How you interpret the result?

taking A as basal value, how much B change? or is B the value that is basal?

regards

This section of the workflow might be useful for you, describing fold changes and the meaning of the results table:

http://www.bioconductor.org/help/workflows/rnaseqGene/#building-the-results-table