Using R to compare whole genome sequences/FASTA files to find percent difference
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Jocelyn • 0
@jocelyn-24796
Last seen 9 weeks ago

I am a high schooler new to R trying to do a bioinformatics project using FASTA files. I want to find a quantitive value for the difference between my test and reference sequence so I can run a chi square test and determine if the difference is statistically significant.

When I used the NCBI BLAST for global align, my sequences were too large. Are there any R packages that would be recommended to compare FASTA/whole genome files?

Genome GWASdata • 46 views
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