I have problems with RnBeads. In particular, It does not work the rnb.run.dj() command to open RnBeads Data Juggler.
RnBeads team said me to install the last version of RnBeads package through the following link:
However, I still have problems, also after installing the last R version "4.1" for the last release of RnBeads.
I run the following commands:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") # The following initializes usage of Bioc devel BiocManager::install(version='devel') BiocManager::install("RnBeads")
After, I tried to load RnBeads with:
And in R console, I found:
namespace for "ggplot2" in loadNamespace (j <- i [[1L]], c (lib.loc,.libPaths ()), versionCheck = vI [[j]]): there is no package called 'pillar' Error: Package "ggplot2" could not be loaded
Therefore, I cannot use rnb.run.dj() to launch RnBeads Data Juggler, since R does not find the function.
Might someone help me? Thank u!
sessionInfo(): R Under development (unstable) (2021-02-23 r80032) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows 10 x64 (build 19042) Matrix products: default locale:  LC_COLLATE=Italian_Italy.1252 LC_CTYPE=Italian_Italy.1252 LC_MONETARY=Italian_Italy.1252 LC_NUMERIC=C LC_TIME=Italian_Italy.1252 attached base packages:  grid stats4 parallel stats graphics grDevices utils datasets methods base other attached packages:  fields_11.6 spam_2.6-0 dotCall64_1.0-1 ff_4.0.4 bit_4.0.4 cluster_2.1.1 MASS_7.3-53.1  GenomicRanges_1.43.3 GenomeInfoDb_1.27.6 IRanges_2.25.6 S4Vectors_0.29.7 BiocGenerics_0.37.1 loaded via a namespace (and not attached):  compiler_4.1.0 BiocManager_1.30.10 XVector_0.31.1 bitops_1.0-6 tools_4.1.0 zlibbioc_1.37.0  lifecycle_1.0.0 gtable_0.3.0 rlang_0.4.10 GenomeInfoDbData_1.2.4 maps_3.3.0 glue_1.4.2  R6_2.5.0 magrittr_2.0.1 scales_1.1.1 ellipsis_0.3.1 colorspace_2.0-0 RCurl_1.98-1.2  munsell_0.5.0