error during installation of 'DEseq2' package
1
0
Entering edit mode
su • 0
@su-24870
Last seen 3.0 years ago

Hello there, I came across an error while installing pacakge 'DEseq2' using BiocManager::install("DEseq2").

Bioconductor version 3.12 (BiocManager 1.30.10), R 4.0.4 (2021-02-15)
Installing package(s) 'DESeq2'
cannot open URL 'https://bioconductor.org/packages/3.12/data/annotation/bin/macosx/contrib/4.0/PACKAGES.rds': HTTP status was '404 Not Found'
cannot open URL 'https://bioconductor.org/packages/3.12/data/annotation/bin/macosx/contrib/4.0/PACKAGES.gz': HTTP status was '404 Not Found'
cannot open URL 'https://bioconductor.org/packages/3.12/data/experiment/bin/macosx/contrib/4.0/PACKAGES.rds': HTTP status was '404 Not Found'
cannot open URL 'https://bioconductor.org/packages/3.12/data/experiment/bin/macosx/contrib/4.0/PACKAGES.gz': HTTP status was '404 Not Found'
cannot open URL 'https://bioconductor.org/packages/3.12/workflows/bin/macosx/contrib/4.0/PACKAGES.rds': HTTP status was '404 Not Found'
cannot open URL 'https://bioconductor.org/packages/3.12/workflows/bin/macosx/contrib/4.0/PACKAGES.gz': HTTP status was '404 Not Found'
trying URL 'https://bioconductor.org/packages/3.12/bioc/bin/macosx/contrib/4.0/DESeq2_1.30.1.tgz'

Anyone knows what was happening here, was there a probelm regarding internet or soemthing else?

Welcome for any advice and suggestions. Many thanks in advance.

DESeq2 Install • 860 views
ADD COMMENT
0
Entering edit mode
@herve-pages-1542
Last seen 12 hours ago
Seattle, WA, United States

Hi,

We're not able to reproduce this. Can you try this again and show us the full output of the BiocManager::install("DEseq2") command?

FWIW the fact that these URLs cannot be accessed is expected (and is normally silently ignored), and it should not affect the final outcome i.e. you should still see that DESeq2 gets downloaded and installed.

Thanks,

H.

ADD COMMENT

Login before adding your answer.

Traffic: 702 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6