Question

Diffbind error while running example data

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Lucky • 0

@lucky-24920

Last seen 23 months ago

India

I am running example code from the link I am getting error as mentioned below, I succesfully installed the diffbind I am thinking its issue with reading file with the dba.analyze

setwd(system.file('extra',package='DiffBind'))
tamoxifen <- dba.analyze("tamoxifen.csv")

sessionInfo( ) error

Error: $ operator is invalid for atomic vectors

help me resolve the issue

Thank you

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DiffBind • 983 views

ADD COMMENT • link written 3.1 years ago by Lucky • 0

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ADD REPLY • link 4 months ago zabivnoikefy • 0

score 1 · Answer 1 · 2021-03-03

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Rory Stark ★ 5.2k

@rory-stark-5741

Last seen 13 days ago

Cambridge, UK

I'm not clear why sessionInfo() would return an error -- I've never seen that before.

One thing I can tell you is that you need to download the data to run all of the vignette code, as the data are not included with the package.

You can find a link to the 500Mb download here: https://www.cruk.cam.ac.uk/core-facilities/bioinformatics-core/software/DiffBind

ADD COMMENT • link 3.1 years ago Rory Stark ★ 5.2k

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Thank you for the replay, I figure it out, I downloaded files from the link, I changed R version from 3.6 to 4 after that it worked

ADD REPLY • link 3.1 years ago Lucky • 0