Diffbind error while running example data
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Lucky • 0
@lucky-24920
Last seen 18 days ago

I am running example code from the link I am getting error as mentioned below, I succesfully installed the diffbind I am thinking its issue with reading file with the dba.analyze

setwd(system.file('extra',package='DiffBind'))
tamoxifen <- dba.analyze("tamoxifen.csv")

sessionInfo( ) error

Error: $ operator is invalid for atomic vectors

help me resolve the issue

Thank you

```

DiffBind • 130 views
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Rory Stark ★ 3.8k
@rory-stark-5741
Last seen 22 hours ago
CRUK, Cambridge, UK

I'm not clear why sessionInfo() would return an error -- I've never seen that before.

One thing I can tell you is that you need to download the data to run all of the vignette code, as the data are not included with the package.

You can find a link to the 500Mb download here: https://www.cruk.cam.ac.uk/core-facilities/bioinformatics-core/software/DiffBind

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Thank you for the replay, I figure it out, I downloaded files from the link, I changed R version from 3.6 to 4 after that it worked

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