Have been trying to download package pd.hta.2.0 with no success. I have tried on multiple computers, different R versions (4.0.3 & 4.0.4 respectively), different internet sources, etc. I continually get a timeout message. I haven't on my way found any good alternatives for downloading the package (I'm not an expert in this area and don't want to mess up my libraries or something by accident).
Context: I need it to run an analysis on some microarray data from Thermofisher/affymetrix using oligo. Oligo will not run without the correct annotation package, which in my case is pd.hta.2.0
BiocManager::install("pd.hta.2.0")
Bioconductor version 3.12 (BiocManager 1.30.10), R 4.0.3 (2020-10-10)
Installing package(s) 'pd.hta.2.0'
installing the source package ‘pd.hta.2.0’
trying URL 'https://bioconductor.org/packages/3.12/data/annotation/src/contrib/pd.hta.2.0_3.12.2.tar.gz'
Content type 'application/x-gzip' length 373269686 bytes (356.0 MB)
====
downloaded 31.7 MB
Error in download.file(url, destfile, method, mode = "wb", ...) :
download from 'https://bioconductor.org/packages/3.12/data/annotation/src/contrib/pd.hta.2.0_3.12.2.tar.gz' failed
In addition: Warning messages:
1: In download.file(url, destfile, method, mode = "wb", ...) :
downloaded length 33235440 != reported length 373269686
2: In download.file(url, destfile, method, mode = "wb", ...) :
URL 'https://bioconductor.org/packages/3.12/data/annotation/src/contrib/pd.hta.2.0_3.12.2.tar.gz': Timeout of 60 seconds was reached
Warning in download.packages(pkgs, destdir = tmpd, available = available, :
download of package ‘pd.hta.2.0’ failed
sessionInfo()
R version 4.0.3 (2020-10-10)
Platform: x86_64-apple-darwin17.0 (64-bit)
Running under: macOS Mojave 10.14.6
Matrix products: default
BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRlapack.dylib
Random number generation:
RNG: Mersenne-Twister
Normal: Inversion
Sample: Rounding
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] XML_3.99-0.5
loaded via a namespace (and not attached):
[1] crayon_1.4.1 dplyr_1.0.5 R6_2.5.0 lifecycle_1.0.0 magrittr_2.0.1
[6] pillar_1.5.1 rlang_0.4.10 vctrs_0.3.6 generics_0.1.0 ellipsis_0.3.1
[11] tools_4.0.3 glue_1.4.2 purrr_0.3.4 yaml_2.2.1 compiler_4.0.3
[16] pkgconfig_2.0.3 BiocManager_1.30.10 tidyselect_1.1.0 tibble_3.1.0