I am doing analysis of methylation data from EPIC array (Illumina). After running analysis with RnBeads, the analysis.log file reports warning messages concerning the tracks and tables module, as reported following:
STATUS STARTED Exporting sites 2021-03-07 15:36:10 2.6 STATUS STARTED Creating Track Hub -- bigBed 2021-03-07 15:36:10 2.6 WARNING Skipped conversion bed -> bigBed for region type sites; could not find the tool bedToBigBed 2021-03-07 15:36:10 2.6 STATUS COMPLETED Creating Track Hub -- bigBed 2021-03-07 15:36:11 2.6 STATUS STARTED Creating UCSC Track Hub -- bigWig 2021-03-07 15:36:11 2.6 WARNING Skipped conversion bedGraph -> bigWig for region type sites; could not find the tool bedGraphToBigWig 2021-03-07 15:36:11 2.6 STATUS COMPLETED Creating UCSC Track Hub -- bigWig 2021-03-07 15:36:11 2.6 STATUS COMPLETED Exporting sites
How could I solve the skipped conversion to bigBed and bigWig? The warning says that there aren't bedToBigBed bedGraphToBigWig tools... are they R packages?