edgeR - Chapter 4.8 Time Course RNAseq experiments
1
0
Entering edit mode
HS ▴ 10
@hakusen03-10599
Last seen 5 months ago
United States

Hi, I'm running the example code for Time Course RNAseq experiments (section 4.8.8), and I'm getting the following error 'Error in dimnames(x$table) <- value : attempt to set an attribute on NULL' after running logCPM.fit <- cpm(fit, log=TRUE). How can I fix this error? Is there a step that wasn't included in the example?

Thanks,

edgeR TimeCourse RNASeq • 869 views
ADD COMMENT
0
Entering edit mode
@gordon-smyth
Last seen 31 minutes ago
WEHI, Melbourne, Australia

New features are added regularly to edgeR and the documentation is updated accordingly. You are apparently reading the edgeR User's Guide that comes with current release of Bioconductor but running an older version of Bioconductor and the edgeR software.

The problem will be solved if you install the current release of Bioconductor (as advised in the Bioconductor Support posting guide). If you don't want to do that then you wound need to stick to the documentation that comes with the version of edgeR that you are using.

ADD COMMENT
0
Entering edit mode

It is working now after updating R. Thank you!

ADD REPLY

Login before adding your answer.

Traffic: 720 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6