I have a package called cinaR on CRAN which depends on
Recently, I got a mail from CRAN team about building error and warnings. See here.
Therefore, I sent an update (which worked fine on my setup, with --as-cran check, and on winbuilder) but again failed with the same warning.
>> Experiment type: ATAC-Seq >> Matrix is filtered! Quitting from lines 53-55 (cinaR.Rmd) Error: processing vignette 'cinaR.Rmd' failed with diagnostics: error in evaluating the argument 'args' in selecting a method for function 'do.call': GRanges objects don't support [[, as.list(), lapply(), or unlist() at the moment --- failed re-building 'cinaR.Rmd'
and between the last print (
"Matrix is filtered!") and the error, I only initialize a
Granges object and required TxDb objects (lines 318-360 of cinaR.R). Next, I send these objects to annotatePeak function from
ChIPseeker which normally prints several things to console, yet in my case does not. Also, when I told about this to CRAN team, they told me "...neither ChIPseeker nor your package can be installed in
R-devel", which seemed to me like the core of my problem.
So, is there anything I could do about this situation?
Thank you for your replies,