Error when reading qPCR data in SDS format
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Nghia • 0
@nghia-25186
Last seen 5 days ago

Hi, I've been having trouble importing qPCR data in the SDS format. What could this error be caused by?

Importing the SDS_sample.txt from the HTqPCR example data works as expected.

Many thanks!


> debug <- readCtData(files = "debug.txt",
+                     path = "./debug",
+                     format = "SDS"
+                     )
Error in X[, cols] <- apply(data, 2, function(x) as.numeric(as.character(x))) : 
  number of items to replace is not a multiple of replacement length
> sessionInfo()
R version 4.0.5 (2021-03-31)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 21343)

Matrix products: default

locale:
[1] LC_COLLATE=English_Australia.1252  LC_CTYPE=English_Australia.1252   
[3] LC_MONETARY=English_Australia.1252 LC_NUMERIC=C                      
[5] LC_TIME=English_Australia.1252    
system code page: 932

attached base packages:
[1] parallel  stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] HTqPCR_1.44.0       limma_3.46.0        RColorBrewer_1.1-2  Biobase_2.50.0     
[5] BiocGenerics_0.36.0

loaded via a namespace (and not attached):
 [1] Rcpp_1.0.6            gtools_3.8.2          bitops_1.0-6          cellranger_1.1.0     
 [5] affy_1.68.0           stats4_4.0.5          KernSmooth_2.23-18    gplots_3.1.1         
 [9] zlibbioc_1.36.0       readxl_1.3.1          affyio_1.60.0         preprocessCore_1.52.1
[13] tools_4.0.5           compiler_4.0.5        BiocManager_1.30.12   caTools_1.18.2       
>
HTqPCR • 36 views
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