Error when reading qPCR data in SDS format
0
0
Entering edit mode
Nghia • 0
@nghia-25186
Last seen 3.1 years ago

Hi, I've been having trouble importing qPCR data in the SDS format. What could this error be caused by?

Importing the SDS_sample.txt from the HTqPCR example data works as expected.

Many thanks!


> debug <- readCtData(files = "debug.txt",
+                     path = "./debug",
+                     format = "SDS"
+                     )
Error in X[, cols] <- apply(data, 2, function(x) as.numeric(as.character(x))) : 
  number of items to replace is not a multiple of replacement length
> sessionInfo()
R version 4.0.5 (2021-03-31)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 21343)

Matrix products: default

locale:
[1] LC_COLLATE=English_Australia.1252  LC_CTYPE=English_Australia.1252   
[3] LC_MONETARY=English_Australia.1252 LC_NUMERIC=C                      
[5] LC_TIME=English_Australia.1252    
system code page: 932

attached base packages:
[1] parallel  stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] HTqPCR_1.44.0       limma_3.46.0        RColorBrewer_1.1-2  Biobase_2.50.0     
[5] BiocGenerics_0.36.0

loaded via a namespace (and not attached):
 [1] Rcpp_1.0.6            gtools_3.8.2          bitops_1.0-6          cellranger_1.1.0     
 [5] affy_1.68.0           stats4_4.0.5          KernSmooth_2.23-18    gplots_3.1.1         
 [9] zlibbioc_1.36.0       readxl_1.3.1          affyio_1.60.0         preprocessCore_1.52.1
[13] tools_4.0.5           compiler_4.0.5        BiocManager_1.30.12   caTools_1.18.2       
>
HTqPCR • 505 views
ADD COMMENT

Login before adding your answer.

Traffic: 828 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6