Applying exomeCopy to call CNVs withouts controls considering batch effects
0
0
Entering edit mode
Cheng • 0
@cheng-25188
Last seen 16 months ago
Central

Recently I wanna find CNVs from about 1000 samples whole exome sequencing data with exomeCopy but I have got confused on some details.

1. All my samples are affected, so how can I do the function named generateBackground without any control samples?
2. How can I deal with batch effects using ecomeCopy?

exomeCopy CNV WES • 247 views