Need help in understanding MSstatsTMT package
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Rishav ▴ 20
@rishav-25031
Last seen 3 days ago
Patna

I am doing proteomics analysis using the "MSstatsTMT" a Bioconductor package. To start the analysis, I need three files : "evidence.txt" , "proteinGroups.txt" and "annotation.csv". I have two files : "evidence.txt" and "proteinGroups.txt" but I do not have "annotation.csv" file. While studying the manual of MSstatsTMT , it is being written that :

# Users should make this annotation file. It is not the output from MaxQuant.


So, my question is how can I create the annotation file. Any help would be appreciated.

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