Rsamtools: how to output base positions on reads
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@9c113504
Last seen 7 weeks ago
Japan

When running samtools mpileup, the "-O --output-BP" option is used to get the base positions on the aligned reads. Is it possible to do the same in Rsamtools?

Rsamtools • 101 views
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Can you add to your question to provide a more complete example of the output that you are after? Have you explored the pileup() command?

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