I am using DESeq2 for identifying DEG through RNASeq data. In this step,
dds <- DESeq(dds) res <- results(dds, name = "SampleGroup_Tumor_vs_Normal")
For confidence in the study, I just want to know what are the "SampleID" (Name) which are considered as "Tumor" and what are the SampleID which are considered as "Normal"
Please guide in this regards,
My design file is like this, SampleID SampleGroup TK_H0248_1 Tumor TK_H0248_3 Tumor TK_H0248_5 Tumor TK_M1833_4 Tumor TK_M1833_8 Tumor N_H0248_6 Normal N_H0248_9 Normal N_M1833_7 Normal