I was trying to install the conumee package with BiocManager, and the manager was trying to install the dependency lluminaHumanMethylationEPICanno.ilm10b2.hg19. I removed the file called 00LOCK-IlluminaHumanMethylationEPICanno.ilm10b2.hg19 from my R repository because I have red that it blocked my package installation
But now, when installing the package lluminaHumanMethylationEPICanno.ilm10b2.hg19, I get a cold killed
BiocManager::install("conumee") replacement repositories: CRAN: https://cloud.r-project.org Bioconductor version 3.13 (BiocManager 1.30.16), R 4.1.0 (2021-05-18) Installing package(s) 'conumee' installation de la dépendance ‘IlluminaHumanMethylationEPICanno.ilm10b2.hg19’ essai de l'URL 'https://bioconductor.org/packages/3.13/data/annotation/src/contrib/IlluminaHumanMethylationEPICanno.ilm10b2.hg19_0.6.0.tar.gz' Content type 'application/x-gzip' length 158636019 bytes (151.3 MB) ================================================== downloaded 151.3 MB essai de l'URL 'https://bioconductor.org/packages/3.13/bioc/src/contrib/conumee_1.26.0.tar.gz' Content type 'application/x-gzip' length 1255651 bytes (1.2 MB) ================================================== downloaded 1.2 MB * installing *source* package ‘IlluminaHumanMethylationEPICanno.ilm10b2.hg19’ ... * using staged installation ** data *** moving datasets to lazyload DB Killed ERROR: dependency ‘IlluminaHumanMethylationEPICanno.ilm10b2.hg19’ is not available for package ‘conumee’ * removing ‘/home/diegolito/R/x86_64-pc-linux-gnu-library/4.1/conumee’ The downloaded source packages are in ‘/tmp/Rtmpz9kvfg/downloaded_packages’ Installation paths not writeable, unable to update packages path: /usr/lib/R/library packages: spatial Messages d'avis : 1: Dans .inet_warning(msg) : installation of package ‘IlluminaHumanMethylationEPICanno.ilm10b2.hg19’ had non-zero exit status 2: Dans .inet_warning(msg) : installation of package ‘conumee’ had non-zero exit status
R version 4.1.0 (2021-05-18) -- "Camp Pontanezen" Copyright (C) 2021 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) )
Killed means my system is out of memory right ? I have 4 GB Ram, with 2.3 GB ocupied at rest.
I don't really know how I can resolve that
Thank you for your attention, I really hope you have any idea how to work solutions for that kind of issues