When I run `zlm` with several clusters, how to compare 1 cluster versus all the others?
0
1
Entering edit mode
Dan • 0
@63648ae2
Last seen 17 months ago
United States

When I run zlm with several clusters (I have clusters 1-7), how to compare 1 cluster versus all the others?

zlmCond <- zlm(formula = ~leiden_r0.3 + n_genes, sca=sca, method = "glm")
1_vs_others <- summary(zlmCond, logFC = TRUE, doLRT = 'leiden_r0.31')

Error Term(s) 'leiden_r0.31 ,' not found. Terms available: (Intercept) , leiden_r0.32 , leiden_r0.33 , leiden_r0.34 , leiden_r0.35 , leiden_r0.36 , leiden_r0.37 , n_genes

MAST • 764 views
ADD COMMENT

Login before adding your answer.

Traffic: 677 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6