EnrichGO
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Neha • 0
@3fa075d2
Last seen 10 weeks ago
Finland

I have list of 222 genes with ENSEBL id, gene symbol, log fold Then I executed the following commands

data <- read.table("human_retine.txt", header=TRUE, dec=",")

# Gene Ontology classification
genes <- data$Ensembl_Gene_ID
genes <- as.character(genes)

ggo <- groupGO(gene = genes, Orgdb ="org.Hs.eg.db", keytype = "ENSEMBL", ont = "BP", level = 3, readable = TRUE)

# Enrich GO
genes<-data$Ensembl_Gene_ID[abs(data$log2FC_DeSeq)]
ego <- enrichGO(genes , Orgdb ="org.Hs.eg.db", keytype = "ENSEMBL", , ont= "CC", pAdjustMethod="BH", pvalueCutoff=0.1, qvalueCutoff=0.5, readable= TRUE)

I am getting only 3 genes in ego variable. I need help to get dotplot and enrich barplot for my data.

R enrichplot • 88 views
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