How to install "blockwiseModules" in Bioconductor version 3.13
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@b8c71f89
Last seen 8 weeks ago
United States

Hello, I'm working through my first batch of WGCNA analysis and unfortunately I don't have an experienced bioinformatician to work with. Recently I updated my Bioconductor version to "3.13" . But I can install packagespackage "blockwiseModules" by BiocManager::install(). Please see the error message below. What should I do? Thank you!

    > BiocManager::install("blockwiseModules")

    'getOption("repos")' replaces Bioconductor
standard repositories, see '?repositories' for
details

    replacement repositories:
    CRAN: https://cran.rstudio.com/

Bioconductor version 3.13 (BiocManager 1.30.16),
  R 4.1.0 (2021-05-18)
Installing package(s) 'blockwiseModules'
Old packages: 'cachem', 'RSQLite', 'survival'
Update all/some/none? [a/s/n]: 
n
Warning message:
In .inet_warning(msg) :
  package ‘blockwiseModules’ is not available for Bioconductor version '3.13'

A version of this package for your version of R might be available elsewhere,
see the ideas at
https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
>
Bioconductor • 190 views
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ATpoint ▴ 860
@atpoint-13662
Last seen 3 days ago
Germany

This is a WGCNA function, not a package to install. Install WGCNA and run the function as blockwiseModules() after libary(WGCNA).

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