Installation of the latest "GenomeInfoDb" fails with an error in attempting to extract the zip file. Is this a corrupted file or a problem with my Windows system? All previous installations on this computer proceeded smoothly. All other libraries from the Bioconductor install without a problem. However, without this, the entire
Biostrings library is not functional!
# simple installation attempt leads to failure > BiocManager::install("GenomeInfoDb") Bioconductor version 3.13 (BiocManager 1.30.16), R 4.1.1 (2021-08-10) Installing package(s) 'GenomeInfoDb' trying URL 'https://bioconductor.org/packages/3.13/bioc/bin/windows/contrib/4.1/GenomeInfoDb_1.28.1.zip' Content type 'application/zip' length 4160116 bytes (4.0 MB) downloaded 4.0 MB The downloaded binary packages are in C:\Users\XXXXXX\AppData\Local\Temp\RtmpctdRtV\downloaded_packages Warning message: In .inet_warning(msg) : error -3 in extracting from zip file
The two pertinent files,
GenomeInfoDb_1.28.1.zip1 are in the temp file as indicated above.
sessionInfo( ) R version 4.1.1 (2021-08-10) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows 10 x64 (build 19042) Matrix products: default locale:  LC_COLLATE=English_United States.1252  LC_CTYPE=English_United States.1252  LC_MONETARY=English_United States.1252  LC_NUMERIC=C  LC_TIME=English_United States.1252 attached base packages:  stats graphics grDevices utils datasets methods base loaded via a namespace (and not attached):  BiocManager_1.30.16 compiler_4.1.1 tools_4.1.1