Pushing a new build of package to Bioconductor
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Entering edit mode
shokoohi • 0
@shokoohi-12311
Last seen 2.7 years ago
USA/Las Vegas/University of Nevada Las …

Hello, I am trying to push a new build of my package fmrs to biocondcutor but it does not work properly. I have tried many solutions and none of them work. For instance see the following log

farhad@Farhads-iMac fmrs % git remote add upstream git@git.bioconductor.org:packages/fmrs.git  
farhad@Farhads-iMac fmrs % git checkout master
M   DESCRIPTION
D   vignettes/usingfmrs.R
M   vignettes/usingfmrs.Rmd
D   vignettes/usingfmrs.html
Already on 'master'
Your branch is up to date with 'origin/master'.
farhad@Farhads-iMac fmrs % git status
On branch master
Your branch is up to date with 'origin/master'.

Changes not staged for commit:
  (use "git add/rm <file>..." to update what will be committed)
  (use "git restore <file>..." to discard changes in working directory)
    modified:   DESCRIPTION
    deleted:    vignettes/usingfmrs.R
    modified:   vignettes/usingfmrs.Rmd
    deleted:    vignettes/usingfmrs.html

Untracked files:
  (use "git add <file>..." to include in what will be committed)
inst/doc/

no changes added to commit (use "git add" and/or "git commit -a")
farhad@Farhads-iMac fmrs % git add DESCRIPTION
farhad@Farhads-iMac fmrs % git add  vignettes/usingfmrs.R
farhad@Farhads-iMac fmrs % git add vignettes/usingfmrs.Rmd
farhad@Farhads-iMac fmrs % git add vignettes/usingfmrs.html
farhad@Farhads-iMac fmrs % git push                        
Everything up-to-date
farhad@Farhads-iMac fmrs % git checkout master      
M   DESCRIPTION
D   vignettes/usingfmrs.R
M   vignettes/usingfmrs.Rmd
D   vignettes/usingfmrs.html
Already on 'master'
Your branch is up to date with 'origin/master'.
farhad@Farhads-iMac fmrs % git push
Everything up-to-date
farhad@Farhads-iMac fmrs % git remote -v
origin  git@git.bioconductor.org:packages/fmrs (fetch)
origin  git@git.bioconductor.org:packages/fmrs (push)
upstream    git@git.bioconductor.org:packages/fmrs.git (fetch)
upstream    git@git.bioconductor.org:packages/fmrs.git (push)
farhad@Farhads-iMac fmrs % git checkout master
M   DESCRIPTION
D   vignettes/usingfmrs.R
M   vignettes/usingfmrs.Rmd
D   vignettes/usingfmrs.html
Already on 'master'
Your branch is up to date with 'origin/master'.
farhad@Farhads-iMac fmrs % git checkout master
M   DESCRIPTION
D   vignettes/usingfmrs.R
M   vignettes/usingfmrs.Rmd
D   vignettes/usingfmrs.html
Already on 'master'
Your branch is up to date with 'origin/master'.
farhad@Farhads-iMac fmrs % git push origin master
Everything up-to-date
farhad@Farhads-iMac fmrs % git push upstream master
Everything up-to-date
fmrs • 841 views
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Entering edit mode
@steve-lianoglou-2771
Last seen 19 months ago
United States

It looks like you haven't added and/or commited your local changes to your local repository, and therefore your git push has nothing to push upstream.

Run git status to see if those modified and deleted files need to be staged for commit, them git commit them, then do a git push ...

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