One read per line and other ordering of reads in Gviz
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pillailab1 • 0
@94e404f4
Last seen 3 days ago
United States

Hello, I would like to generate Aligned read tracks where the reads are organized in this following fashion: one read per line only. Arranged by reads 3' end Color reads based on their tags (spliced vs. unspliced etc).

The figure attached shows what I would like to achieve (Panel A is the scheme) The figure is from the following manuscript: https://www.cell.com/molecular-cell/fulltext/S1097-2765(20)30937-0#secsectitle0070

The authors generated the figures from IGV but with a lot of manual manipulation of the svg files. Anyway we can recreate all or any of the features in these images in gviz AlignedTrackReads starting from an alignment file ? Thank you, Manoj ```

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