One read per line and other ordering of reads in Gviz
0
0
Entering edit mode
pillailab1 • 0
@94e404f4
Last seen 2.6 years ago
United States

Hello, I would like to generate Aligned read tracks where the reads are organized in this following fashion: one read per line only. Arranged by reads 3' end Color reads based on their tags (spliced vs. unspliced etc).

The figure attached shows what I would like to achieve (Panel A is the scheme) The figure is from the following manuscript: https://www.cell.com/molecular-cell/fulltext/S1097-2765(20)30937-0#secsectitle0070

The authors generated the figures from IGV but with a lot of manual manipulation of the svg files. Anyway we can recreate all or any of the features in these images in gviz AlignedTrackReads starting from an alignment file ? Thank you, Manoj ```

Gviz • 830 views
ADD COMMENT

Login before adding your answer.

Traffic: 769 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6