I initially posted this on StackOverflow, but I did not receive any responses other than a "downvote". I am hoping I fare better here.
Is there a convenient way to extract a list of genes from a microarray experiment on the Gene Expression Omnibus? The following paper is serving as a source of inspiration and I would like to use it as a model:
I have already located one GSE entry and I am searching for another that explores chemotherapy resistance. My intention is a perform a gene ontology using a tool like DAVID, identify what genes are differentially expressed, and constructing a graph with Cytoscape or RCy3. If there is another library that would facilitate my objective, I would be quite eager to learn about it.
Code should be placed in three backticks as shown below
# include your problematic code here with any corresponding output # please also include the results of running the following in an R session sessionInfo( )