I am starting with the development of packages under Bioconductor... For the moment, I try to understand the construction of a package and for that, I try to compile "Rsamtools" that I take as an example.
But when I try to compile and install the package, I get this error message under Windows:
** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'Rsamtools' finding HTML links ... done ApplyPileupsParam-class html BamFile-class html finding level-2 HTML links ... done BamViews-class html BcfFile-class html FaFile-class html PileupFiles-class html Rsamtools-package html RsamtoolsFile-class html RsamtoolsFileList-class html ScanBamParam-class html ScanBcfParam-class html TabixFile-class html applyPileups html defunct html deprecated html headerTabix html indexTabix html pileup html quickBamFlagSummary html readPileup html scanBam html scanBcf html scanFa html scanTabix html seqnamesTabix html testPairedEndBam html zip html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Error: package or namespace load failed for 'Rsamtools' in inDL(x, as.logical(local), as.logical(now), ...): unable to load shared object 'C:/Users/KarlHal/Documents/R/win-library/4.1/00LOCK-Rsamtools/00new/Rsamtools/libs/x64/Rsamtools.dll': LoadLibrary failure: Le module sp�cifi� est introuvable. Error: loading failed Execution halted ERROR: loading failed * removing 'C:/Users/KarlHal/Documents/R/win-library/4.1/Rsamtools' * restoring previous 'C:/Users/KarlHal/Documents/R/win-library/4.1/Rsamtools' Exited with status 1.
But you can try to install an R package from source without problem, for example:
install.packages("jsonlite", type = "source")
What could be the problem? A problem of permissions?
With my thanks !