unable to load shared object Rsamtools.dll':
Entering edit mode
Franck • 0
Last seen 4 weeks ago


I am starting with the development of packages under Bioconductor... For the moment, I try to understand the construction of a package and for that, I try to compile "Rsamtools" that I take as an example.

But when I try to compile and install the package, I get this error message under Windows:

** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'Rsamtools'
    finding HTML links ... done
    ApplyPileupsParam-class                 html  
    BamFile-class                           html  
    finding level-2 HTML links ... done

    BamViews-class                          html  
    BcfFile-class                           html  
    FaFile-class                            html  
    PileupFiles-class                       html  
    Rsamtools-package                       html  
    RsamtoolsFile-class                     html  
    RsamtoolsFileList-class                 html  
    ScanBamParam-class                      html  
    ScanBcfParam-class                      html  
    TabixFile-class                         html  
    applyPileups                            html  
    defunct                                 html  
    deprecated                              html  
    headerTabix                             html  
    indexTabix                              html  
    pileup                                  html  
    quickBamFlagSummary                     html  
    readPileup                              html  
    scanBam                                 html  
    scanBcf                                 html  
    scanFa                                  html  
    scanTabix                               html  
    seqnamesTabix                           html  
    testPairedEndBam                        html  
    zip                                     html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Error: package or namespace load failed for 'Rsamtools' in inDL(x, as.logical(local), as.logical(now), ...):
 unable to load shared object 'C:/Users/KarlHal/Documents/R/win-library/4.1/00LOCK-Rsamtools/00new/Rsamtools/libs/x64/Rsamtools.dll':
  LoadLibrary failure:  Le module sp�cifi� est introuvable.

Error: loading failed
Execution halted
ERROR: loading failed
* removing 'C:/Users/KarlHal/Documents/R/win-library/4.1/Rsamtools'
* restoring previous 'C:/Users/KarlHal/Documents/R/win-library/4.1/Rsamtools'

Exited with status 1.

But you can try to install an R package from source without problem, for example:

install.packages("jsonlite", type = "source")

What could be the problem? A problem of permissions?

With my thanks !


Devel • 171 views
Entering edit mode

Finally, I only encounter this problem with Rsamtools. It works fine with the other packages.

Thank you for your help!

Entering edit mode

Can you include the command you're running (I guess it's BiocManager::install("Rsamtools", type = "source") )? It would also be useful to see the any output that comes before ** R since that's where the C code compilation is reported.


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