I have generated a DESeq object from matrix as follows:
dds<-DESeqDataSetFromMatrix(countData = counts, colData = sample_data, design = ~ condition)
I also want to use vst counts for downstream analysis - can VST be called without doing anything further to the object generated above? or do i need to run the model by
DEseq and/or calling
There are many hundreds of samples and so I would like to access the VST counts without having to run the model.