I am trying to run sva::ComBat_seq on some count data, i have 100K genes, it doesn't seem to finish running, does ComBat have a limit? Should I reduce the number of genes I am working with?
Thanks in advance.
When you say you have 100,000 genes do you mean you have counts of transcripts? With all the genes, pseudogenes and other elements my typical counts matrix is about 56K.
Hello, Yes, 100K transcripts. I have been trying to run this for almost a day now and it doesn't seem to be running...
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