How to use GO.db select on *ANCESTOR *CHILDREN *PARENTS etc.

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cmfield • 0

@cmfield-18526

Last seen 2.5 years ago

Switzerland

The GO.db manual says to use the AnnotationDbi select method to access the various tables it contains. Whilst this works for the GO.db object itself, the same error occurs for the various other objects:

Error in (function (classes, fdef, mtable)  :
  unable to find an inherited method for function ‘select’ for signature ‘"AnnDbBimap"’

Which suggests they are still using the old method and that select is not supported at all. Is my install wrong, am I doing something wrong?!

Relevant sessionInfo(): R version 4.0.3 (2020-10-10) AnnotationDbi_1.52.0 GO.db version 3.12.1

GO.db • 899 views

ADD COMMENT • link updated 2.5 years ago by James W. MacDonald 65k • written 2.5 years ago by cmfield • 0

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Do you have an example of what you are trying to do? Pasting the error message alone is not super helpful.

ADD REPLY • link 2.5 years ago James W. MacDonald 65k

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