FlowSOM dependencies - cytoML and flowutils
0
0
Entering edit mode
@ddb18a1d
Last seen 15 months ago
Czechia

Hello,

I would like to ask for help with installing the FlowSOM plugin. With the new version R, the problem is to install the cytoML, flowUtils, ConsensusClusterPlus packages and other dependencies. I'm also trying to download packages from the site (e.g. https://www.bioconductor.org/packages/release/bioc/src/contrib/flowUtils_1.56.0.tar.gz), however I'm getting 504 ERROR The request could not be satisfied.

Thanks

Jakub

FlowSOM • 379 views
0
Entering edit mode

There seems to be a general problem with the www.bioconductor.org website at the moment, which is stopping the installation of packages. Hopefully this will be resolved shortly.

You can probably get packages installed by using one of the Bioconductor mirrors. You can set that by using chooseBioCmirror(local.only = TRUE) and picking an option.

0
Entering edit mode

Thank you very much! Japan mirror worked!

Jakub