Get CHR & POS for a list of SNP rs ids (>1M)
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Mahan • 0
@mahan-23989
Last seen 3 days ago
Taiwan

I have a list of SNP rs ids (>1M) for which I would like to find respective CHR and POS information on Hg38. Can you please suggest how I can obtain this information? Thanks in advance Code should be placed in three backticks as shown below


# include your problematic code here with any corresponding output 
# please also include the results of running the following in an R session 

sessionInfo( )
POS CHR SNP rs • 37 views
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@james-w-macdonald-5106
Last seen 4 hours ago
United States

You need the SNPlocs.Hsapiens.dbSNP144.GRCh38 and BSgenome packages for that. See ?snpsById after loading BSgenome.

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