ERROR installing EnhancedVolcano in R4.1
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Raj • 0
@raj-9784
Last seen 2.5 years ago
USA
EnhancedVolcano dependency proj4 failed to install in R 4.1

```In .inet_warning(msg) :
  package ‘proj4 ’ is not available for Bioconductor version '3.13'


# include your problematic code here with any corresponding output 
# please also include the results of running the following in an R session 

sessionInfo( )

```R version 4.1.0 (2021-05-18)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 16.04.6 LTS

Matrix products: default
BLAS:   /usr/lib/libblas/libblas.so.3.6.0
LAPACK: /usr/lib/lapack/liblapack.so.3.6.0

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
 [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

loaded via a namespace (and not attached):
 [1] rstudioapi_0.13     magrittr_2.0.1      usethis_2.0.1      
 [4] devtools_2.4.2      pkgload_1.2.1       R6_2.5.0           
 [7] rlang_0.4.11        fastmap_1.1.0       tools_4.1.0        
[10] pkgbuild_1.2.0      sessioninfo_1.1.1   cli_3.0.1          
[13] withr_2.4.2         ellipsis_0.3.2      remotes_2.4.0      
[16] rprojroot_2.0.2     lifecycle_1.0.0     crayon_1.4.1       
[19] processx_3.5.2      BiocManager_1.30.16 purrr_0.3.4        
[22] callr_3.7.0         fs_1.5.0            ps_1.6.0           
[25] testthat_3.0.4      curl_4.3.2          memoise_2.0.0      
[28] glue_1.4.2          cachem_1.0.5        compiler_4.1.0     
[31] desc_1.3.0          prettyunits_1.1.1  
EnhancedVolcano • 1.5k views
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Raj • 0
@raj-9784
Last seen 2.5 years ago
USA

Tried the following and had success installing EnhancedVolcano

sudo aptitude install libproj-dev libgdal-dev
install.packages("proj4", dependencies=TRUE)
install.packages("ggalt", dependencies = T)
devtools::install_github('kevinblighe/EnhancedVolcano')

Hope it helps someone.

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Thank you for posting a solution. It seems to be an issue relating to proj4, but this is not a direct dependency of EnhancedVolcano.

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