Deleted:DESeq2 PCA
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Jamie • 0
@jac-24317
Last seen 6 weeks ago
United Kingdom

Hi,

I did my RNA-Seq analysis using the Galaxy platform with the following pipeline: HISAT2 --> featureCounts --> DESeq2.

Now I want to recreate the PCA plot in RStudio. In the DESeq2 manual, the command line for this is:

plotPCA(object, intgroup = "condition", ntop = 500, returnData = FALSE)

What is the format of the object/DESeqDataSet exactly?

Apologies for the basic question.

DESeq2 • 132 views
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